report.quali.hlev.RdThis function is mainly used to compute qualitative statistics when there are several events per statistical unit. Often used for reporting adverse events, medical history or concomitant treatments.
It reports frequencies and percentages according to hierarchical levels of two factors.
Typically, adverse event are classified according to System Organ Class (SOC) and then sub classified by Prefered Terms (PT). Several observations of a same adverse event can be observed several times on the same subject. It's then useful to know how many persons are concerned by at least one of those adverse events and report the frequencies for each classifications: SOC and PT.
This is exactly what this function does.
For more examples see the website: ClinReport website
report.quali.hlev(data, subjid = NULL, x1 = NULL, var_upper, var_lower, lower.levels = "Lower.Levels", upper.levels = "Upper.Levels", x1.label = NULL)
| data | A data frame |
|---|---|
| subjid | A character |
| x1 | A character. Indicates a factor in the data frame. |
| var_upper | A character. Indicates a factor in the data frame which corresponds to the factor with the higher number of levels (typically SOC variable) |
| var_lower | A character. Indicates a factor in the data frame which corresponds to the factor with the lower number of levels (typically PT variable) |
| lower.levels | A character. The label to be displayed in the table for the lower terms |
| upper.levels | A character. The label to be displayed in the table for the upper terms |
| x1.label | A character. Not used for now |
A desc object that can be used by the report.doc function.
The subjid argument is mandatory for this function.
report.quali emmeans report.doc desc
data(adverse_event) test=report.quali.hlev(data=adverse_event,subjid="SUBJID",var_upper="PTNAME", var_lower="SOCNAME",lower.levels="System Organ Class",upper.levels="Prefered Terms",x1="randtrt") # show results in console test#> #> ############################################ #> Hierarchichal #> ############################################ #> #> System Organ Class n (%) SOCNAME At least one SOCNAME #> 1 ALL 451(100%) 195/321 = 60.75% #> 2 #> 3 BEHAVIOURAL DISORDERS 3(0.67%) 1/321 = 0.31% #> 4 #> 5 BLOOD AND LYMPHATIC SYSTEM DISORDERS 10(2.22%) 7/321 = 2.18% #> 6 BLOOD AND LYMPHATIC SYSTEM DISORDERS #> 7 BLOOD AND LYMPHATIC SYSTEM DISORDERS #> 8 BLOOD AND LYMPHATIC SYSTEM DISORDERS #> 9 BLOOD AND LYMPHATIC SYSTEM DISORDERS #> 10 #> 11 CARDIO-VASCULAR SYSTEM DISORDERS 21(4.66%) 18/321 = 5.61% #> 12 CARDIO-VASCULAR SYSTEM DISORDERS #> 13 CARDIO-VASCULAR SYSTEM DISORDERS #> 14 CARDIO-VASCULAR SYSTEM DISORDERS #> 15 CARDIO-VASCULAR SYSTEM DISORDERS #> 16 CARDIO-VASCULAR SYSTEM DISORDERS #> 17 CARDIO-VASCULAR SYSTEM DISORDERS #> 18 CARDIO-VASCULAR SYSTEM DISORDERS #> 19 #> 20 DIGESTIVE TRACT DISORDERS 72(15.96%) 55/321 = 17.13% #> 21 DIGESTIVE TRACT DISORDERS #> 22 DIGESTIVE TRACT DISORDERS #> 23 DIGESTIVE TRACT DISORDERS #> 24 DIGESTIVE TRACT DISORDERS #> 25 DIGESTIVE TRACT DISORDERS #> 26 DIGESTIVE TRACT DISORDERS #> 27 DIGESTIVE TRACT DISORDERS #> 28 DIGESTIVE TRACT DISORDERS #> 29 DIGESTIVE TRACT DISORDERS #> 30 DIGESTIVE TRACT DISORDERS #> 31 DIGESTIVE TRACT DISORDERS #> 32 DIGESTIVE TRACT DISORDERS #> 33 DIGESTIVE TRACT DISORDERS #> 34 DIGESTIVE TRACT DISORDERS #> 35 #> 36 EAR AND LABYRINTH DISORDERS 3(0.67%) 3/321 = 0.93% #> 37 EAR AND LABYRINTH DISORDERS #> 38 #> 39 EYE DISORDERS 10(2.22%) 10/321 = 3.12% #> 40 EYE DISORDERS #> 41 EYE DISORDERS #> 42 EYE DISORDERS #> 43 #> 44 HEPATO-BILIARY DISORDERS 5(1.11%) 4/321 = 1.25% #> 45 #> 46 MAMMARY GLAND DISORDERS 1(0.22%) 1/321 = 0.31% #> 47 #> 48 METABOLISM AND NUTRITION DISORDERS 7(1.55%) 6/321 = 1.87% #> 49 METABOLISM AND NUTRITION DISORDERS #> 50 #> 51 MUSCULOSKELETAL DISORDERS 15(3.33%) 12/321 = 3.74% #> 52 MUSCULOSKELETAL DISORDERS #> 53 MUSCULOSKELETAL DISORDERS #> 54 MUSCULOSKELETAL DISORDERS #> 55 MUSCULOSKELETAL DISORDERS #> 56 MUSCULOSKELETAL DISORDERS #> 57 MUSCULOSKELETAL DISORDERS #> 58 #> 59 NEUROLOGICAL DISORDERS 10(2.22%) 10/321 = 3.12% #> 60 NEUROLOGICAL DISORDERS #> 61 NEUROLOGICAL DISORDERS #> 62 NEUROLOGICAL DISORDERS #> 63 NEUROLOGICAL DISORDERS #> 64 NEUROLOGICAL DISORDERS #> 65 #> 66 RENAL AND URINARY DISORDERS 165(36.59%) 105/321 = 32.71% #> 67 RENAL AND URINARY DISORDERS #> 68 RENAL AND URINARY DISORDERS #> 69 RENAL AND URINARY DISORDERS #> 70 RENAL AND URINARY DISORDERS #> 71 RENAL AND URINARY DISORDERS #> 72 RENAL AND URINARY DISORDERS #> 73 #> 74 REPRODUCTIVE SYSTEM DISORDERS 8(1.77%) 7/321 = 2.18% #> 75 REPRODUCTIVE SYSTEM DISORDERS #> 76 REPRODUCTIVE SYSTEM DISORDERS #> 77 REPRODUCTIVE SYSTEM DISORDERS #> 78 REPRODUCTIVE SYSTEM DISORDERS #> 79 #> 80 RESPIRATORY TRACT DISORDERS 35(7.76%) 33/321 = 10.28% #> 81 RESPIRATORY TRACT DISORDERS #> 82 RESPIRATORY TRACT DISORDERS #> 83 RESPIRATORY TRACT DISORDERS #> 84 RESPIRATORY TRACT DISORDERS #> 85 RESPIRATORY TRACT DISORDERS #> 86 RESPIRATORY TRACT DISORDERS #> 87 RESPIRATORY TRACT DISORDERS #> 88 RESPIRATORY TRACT DISORDERS #> 89 RESPIRATORY TRACT DISORDERS #> 90 RESPIRATORY TRACT DISORDERS #> 91 RESPIRATORY TRACT DISORDERS #> 92 #> 93 SKIN AND APPENDAGES DISORDERS 7(1.55%) 7/321 = 2.18% #> 94 SKIN AND APPENDAGES DISORDERS #> 95 SKIN AND APPENDAGES DISORDERS #> 96 SKIN AND APPENDAGES DISORDERS #> 97 #> 98 SYSTEMIC DISORDERS 77(17.07%) 56/321 = 17.45% #> 99 SYSTEMIC DISORDERS #> 100 SYSTEMIC DISORDERS #> 101 SYSTEMIC DISORDERS #> 102 SYSTEMIC DISORDERS #> 103 SYSTEMIC DISORDERS #> 104 SYSTEMIC DISORDERS #> 105 SYSTEMIC DISORDERS #> 106 SYSTEMIC DISORDERS #> 107 #> 108 UNCODED SIGNS 2(0.44%) 2/321 = 0.62% #> 109 #> 110 ALL 235(100%) 142/321 = 44.24% #> 111 #> 112 BEHAVIOURAL DISORDERS 2(0.85%) 1/321 = 0.31% #> 113 #> 114 BLOOD AND LYMPHATIC SYSTEM DISORDERS 8(3.40%) 7/321 = 2.18% #> 115 BLOOD AND LYMPHATIC SYSTEM DISORDERS #> 116 BLOOD AND LYMPHATIC SYSTEM DISORDERS #> 117 BLOOD AND LYMPHATIC SYSTEM DISORDERS #> 118 #> 119 CARDIO-VASCULAR SYSTEM DISORDERS 9(3.83%) 7/321 = 2.18% #> 120 CARDIO-VASCULAR SYSTEM DISORDERS #> 121 CARDIO-VASCULAR SYSTEM DISORDERS #> 122 CARDIO-VASCULAR SYSTEM DISORDERS #> 123 #> 124 DIGESTIVE TRACT DISORDERS 37(15.74%) 34/321 = 10.59% #> 125 DIGESTIVE TRACT DISORDERS #> 126 DIGESTIVE TRACT DISORDERS #> 127 DIGESTIVE TRACT DISORDERS #> 128 DIGESTIVE TRACT DISORDERS #> 129 DIGESTIVE TRACT DISORDERS #> 130 DIGESTIVE TRACT DISORDERS #> 131 DIGESTIVE TRACT DISORDERS #> 132 DIGESTIVE TRACT DISORDERS #> 133 DIGESTIVE TRACT DISORDERS #> 134 DIGESTIVE TRACT DISORDERS #> 135 DIGESTIVE TRACT DISORDERS #> 136 DIGESTIVE TRACT DISORDERS #> 137 #> 138 EAR AND LABYRINTH DISORDERS 2(0.85%) 2/321 = 0.62% #> 139 #> 140 EYE DISORDERS 3(1.28%) 3/321 = 0.93% #> 141 #> 142 HEPATO-BILIARY DISORDERS 2(0.85%) 2/321 = 0.62% #> 143 #> 144 MAMMARY GLAND DISORDERS 1(0.43%) 1/321 = 0.31% #> 145 #> 146 METABOLISM AND NUTRITION DISORDERS 3(1.28%) 2/321 = 0.62% #> 147 METABOLISM AND NUTRITION DISORDERS #> 148 #> 149 MUSCULOSKELETAL DISORDERS 7(2.98%) 6/321 = 1.87% #> 150 MUSCULOSKELETAL DISORDERS #> 151 MUSCULOSKELETAL DISORDERS #> 152 MUSCULOSKELETAL DISORDERS #> 153 MUSCULOSKELETAL DISORDERS #> 154 MUSCULOSKELETAL DISORDERS #> 155 #> 156 NEUROLOGICAL DISORDERS 5(2.13%) 5/321 = 1.56% #> 157 NEUROLOGICAL DISORDERS #> 158 NEUROLOGICAL DISORDERS #> 159 #> 160 RENAL AND URINARY DISORDERS 81(34.47%) 64/321 = 19.94% #> 161 RENAL AND URINARY DISORDERS #> 162 RENAL AND URINARY DISORDERS #> 163 RENAL AND URINARY DISORDERS #> 164 #> 165 REPRODUCTIVE SYSTEM DISORDERS 2(0.85%) 2/321 = 0.62% #> 166 REPRODUCTIVE SYSTEM DISORDERS #> 167 #> 168 RESPIRATORY TRACT DISORDERS 23(9.79%) 23/321 = 7.17% #> 169 RESPIRATORY TRACT DISORDERS #> 170 RESPIRATORY TRACT DISORDERS #> 171 RESPIRATORY TRACT DISORDERS #> 172 RESPIRATORY TRACT DISORDERS #> 173 RESPIRATORY TRACT DISORDERS #> 174 RESPIRATORY TRACT DISORDERS #> 175 RESPIRATORY TRACT DISORDERS #> 176 RESPIRATORY TRACT DISORDERS #> 177 RESPIRATORY TRACT DISORDERS #> 178 #> 179 SKIN AND APPENDAGES DISORDERS 5(2.13%) 5/321 = 1.56% #> 180 SKIN AND APPENDAGES DISORDERS #> 181 SKIN AND APPENDAGES DISORDERS #> 182 SKIN AND APPENDAGES DISORDERS #> 183 #> 184 SYSTEMIC DISORDERS 44(18.72%) 38/321 = 11.84% #> 185 SYSTEMIC DISORDERS #> 186 SYSTEMIC DISORDERS #> 187 SYSTEMIC DISORDERS #> 188 SYSTEMIC DISORDERS #> 189 SYSTEMIC DISORDERS #> 190 SYSTEMIC DISORDERS #> 191 SYSTEMIC DISORDERS #> 192 #> 193 UNCODED SIGNS 1(0.43%) 1/321 = 0.31% #> 194 #> 195 ALL 216(100%) 139/321 = 43.3% #> 196 #> 197 BEHAVIOURAL DISORDERS 1(0.46%) 1/321 = 0.31% #> 198 #> 199 BLOOD AND LYMPHATIC SYSTEM DISORDERS 2(0.93%) 1/321 = 0.31% #> 200 #> 201 CARDIO-VASCULAR SYSTEM DISORDERS 12(5.56%) 12/321 = 3.74% #> 202 CARDIO-VASCULAR SYSTEM DISORDERS #> 203 CARDIO-VASCULAR SYSTEM DISORDERS #> 204 CARDIO-VASCULAR SYSTEM DISORDERS #> 205 CARDIO-VASCULAR SYSTEM DISORDERS #> 206 CARDIO-VASCULAR SYSTEM DISORDERS #> 207 #> 208 DIGESTIVE TRACT DISORDERS 35(16.20%) 31/321 = 9.66% #> 209 DIGESTIVE TRACT DISORDERS #> 210 DIGESTIVE TRACT DISORDERS #> 211 DIGESTIVE TRACT DISORDERS #> 212 DIGESTIVE TRACT DISORDERS #> 213 DIGESTIVE TRACT DISORDERS #> 214 DIGESTIVE TRACT DISORDERS #> 215 DIGESTIVE TRACT DISORDERS #> 216 DIGESTIVE TRACT DISORDERS #> 217 #> 218 EAR AND LABYRINTH DISORDERS 1(0.46%) 1/321 = 0.31% #> 219 #> 220 EYE DISORDERS 7(3.24%) 7/321 = 2.18% #> 221 EYE DISORDERS #> 222 EYE DISORDERS #> 223 EYE DISORDERS #> 224 #> 225 HEPATO-BILIARY DISORDERS 3(1.39%) 3/321 = 0.93% #> 226 #> 227 METABOLISM AND NUTRITION DISORDERS 4(1.85%) 4/321 = 1.25% #> 228 METABOLISM AND NUTRITION DISORDERS #> 229 #> 230 MUSCULOSKELETAL DISORDERS 8(3.70%) 8/321 = 2.49% #> 231 MUSCULOSKELETAL DISORDERS #> 232 MUSCULOSKELETAL DISORDERS #> 233 MUSCULOSKELETAL DISORDERS #> 234 #> 235 NEUROLOGICAL DISORDERS 5(2.31%) 5/321 = 1.56% #> 236 NEUROLOGICAL DISORDERS #> 237 NEUROLOGICAL DISORDERS #> 238 NEUROLOGICAL DISORDERS #> 239 NEUROLOGICAL DISORDERS #> 240 #> 241 RENAL AND URINARY DISORDERS 84(38.89%) 67/321 = 20.87% #> 242 RENAL AND URINARY DISORDERS #> 243 RENAL AND URINARY DISORDERS #> 244 RENAL AND URINARY DISORDERS #> 245 RENAL AND URINARY DISORDERS #> 246 RENAL AND URINARY DISORDERS #> 247 RENAL AND URINARY DISORDERS #> 248 #> 249 REPRODUCTIVE SYSTEM DISORDERS 6(2.78%) 5/321 = 1.56% #> 250 REPRODUCTIVE SYSTEM DISORDERS #> 251 REPRODUCTIVE SYSTEM DISORDERS #> 252 REPRODUCTIVE SYSTEM DISORDERS #> 253 #> 254 RESPIRATORY TRACT DISORDERS 12(5.56%) 10/321 = 3.12% #> 255 RESPIRATORY TRACT DISORDERS #> 256 RESPIRATORY TRACT DISORDERS #> 257 RESPIRATORY TRACT DISORDERS #> 258 RESPIRATORY TRACT DISORDERS #> 259 RESPIRATORY TRACT DISORDERS #> 260 RESPIRATORY TRACT DISORDERS #> 261 RESPIRATORY TRACT DISORDERS #> 262 RESPIRATORY TRACT DISORDERS #> 263 #> 264 SKIN AND APPENDAGES DISORDERS 2(0.93%) 2/321 = 0.62% #> 265 SKIN AND APPENDAGES DISORDERS #> 266 #> 267 SYSTEMIC DISORDERS 33(15.28%) 29/321 = 9.03% #> 268 SYSTEMIC DISORDERS #> 269 SYSTEMIC DISORDERS #> 270 SYSTEMIC DISORDERS #> 271 SYSTEMIC DISORDERS #> 272 SYSTEMIC DISORDERS #> 273 SYSTEMIC DISORDERS #> 274 SYSTEMIC DISORDERS #> 275 #> 276 UNCODED SIGNS 1(0.46%) 1/321 = 0.31% #> Prefered Terms n (%) PTNAME At least one PTNAME #> 1 ALL 451(100%) 195/321 = 60.75% #> 2 #> 3 ANXIETY 3(0.67%) 1/321 = 0.31% #> 4 #> 5 ANAEMIA NOS 1(0.22%) 1/321 = 0.31% #> 6 LYMPHADENITIS 1(0.22%) 1/321 = 0.31% #> 7 RED BLOOD CELL DISORDER NOS 2(0.44%) 1/321 = 0.31% #> 8 HAEMOLYTIC ANAEMIA 1(0.22%) 1/321 = 0.31% #> 9 LEUCOCYTOSIS 5(1.11%) 5/321 = 1.56% #> 10 #> 11 HEART DISORDER AGGRAVATED 2(0.44%) 2/321 = 0.62% #> 12 HEART BLOCK 2(0.44%) 2/321 = 0.62% #> 13 HYPOTENSION 5(1.11%) 5/321 = 1.56% #> 14 HYPERTENSION 3(0.67%) 2/321 = 0.62% #> 15 CARDIAC ARREST 2(0.44%) 2/321 = 0.62% #> 16 CARDIAC DISORDER NOS 1(0.22%) 1/321 = 0.31% #> 17 ARRHYTHMIA 5(1.11%) 4/321 = 1.25% #> 18 VALVULAR DISORDER 1(0.22%) 1/321 = 0.31% #> 19 #> 20 COLITIS 1(0.22%) 1/321 = 0.31% #> 21 GINGIVAL DISORDER 2(0.44%) 1/321 = 0.31% #> 22 DIGESTIVE TRACT NEOPLASM NOS 1(0.22%) 1/321 = 0.31% #> 23 EMESIS 27(5.99%) 23/321 = 7.17% #> 24 ENTERITIS 1(0.22%) 1/321 = 0.31% #> 25 ANAL SAC DISORDER 1(0.22%) 1/321 = 0.31% #> 26 NAUSEA 1(0.22%) 1/321 = 0.31% #> 27 HAEMORRHAGIC GASTROENTERITIS 1(0.22%) 1/321 = 0.31% #> 28 GASTROENTERITIS 5(1.11%) 5/321 = 1.56% #> 29 INTESTINAL STASIS 4(0.89%) 3/321 = 0.93% #> 30 HAEMORRHAGIC DIARRHOEA 2(0.44%) 2/321 = 0.62% #> 31 DIARRHOEA 17(3.77%) 15/321 = 4.67% #> 32 DIGESTIVE TRACT DISORDER NOS 5(1.11%) 5/321 = 1.56% #> 33 TOOTH DISORDER 2(0.44%) 2/321 = 0.62% #> 34 STOMATITIS 2(0.44%) 2/321 = 0.62% #> 35 #> 36 OTITIS NOS 2(0.44%) 2/321 = 0.62% #> 37 OTITIS EXTERNA 1(0.22%) 1/321 = 0.31% #> 38 #> 39 GLAUCOMA 1(0.22%) 1/321 = 0.31% #> 40 CORNEAL ULCER 1(0.22%) 1/321 = 0.31% #> 41 KERATITIS 1(0.22%) 1/321 = 0.31% #> 42 CONJUNCTIVITIS 7(1.55%) 7/321 = 2.18% #> 43 #> 44 HEPATOPATHY 5(1.11%) 4/321 = 1.25% #> 45 #> 46 MAMMARY GLAND NEOPLASM NOS 1(0.22%) 1/321 = 0.31% #> 47 #> 48 HYPERPHOSPHATAEMIA 2(0.44%) 2/321 = 0.62% #> 49 ELECTROLYTE DISORDER 5(1.11%) 4/321 = 1.25% #> 50 #> 51 ARTHROSIS 2(0.44%) 2/321 = 0.62% #> 52 MUSCULOSKELETAL DISORDER NOS 4(0.89%) 3/321 = 0.93% #> 53 ARTHRITIS 1(0.22%) 1/321 = 0.31% #> 54 LAMENESS 4(0.89%) 4/321 = 1.25% #> 55 BONE AND JOINT DISORDER NOS 1(0.22%) 1/321 = 0.31% #> 56 MUSCLE WEAKNESS NOS 1(0.22%) 1/321 = 0.31% #> 57 OSTEOSARCOMA 2(0.44%) 1/321 = 0.31% #> 58 #> 59 CONVULSION 2(0.44%) 2/321 = 0.62% #> 60 CRANIAL NERVE DISORDER 1(0.22%) 1/321 = 0.31% #> 61 MUSCLE TREMOR 1(0.22%) 1/321 = 0.31% #> 62 EPILEPTIC SEIZURE 1(0.22%) 1/321 = 0.31% #> 63 MYDRIASIS 1(0.22%) 1/321 = 0.31% #> 64 ATAXIA 4(0.89%) 4/321 = 1.25% #> 65 #> 66 URINE ABNORMALITIES 3(0.67%) 2/321 = 0.62% #> 67 CYSTITIS 5(1.11%) 5/321 = 1.56% #> 68 RENAL INSUFFICIENCY 144(31.93%) 96/321 = 29.91% #> 69 URINARY TRACT DISORDER NOS 2(0.44%) 2/321 = 0.62% #> 70 POLYURIA 4(0.89%) 4/321 = 1.25% #> 71 URINARY INCONTINENCE 6(1.33%) 6/321 = 1.87% #> 72 UROLITHIASIS 1(0.22%) 1/321 = 0.31% #> 73 #> 74 PSEUDOPREGNANCY 1(0.22%) 1/321 = 0.31% #> 75 METRITIS 2(0.44%) 2/321 = 0.62% #> 76 FEMALE REPRODUCTIVE TRACT NEOPLASM NOS 2(0.44%) 1/321 = 0.31% #> 77 PROSTATIC DISORDER NOS 2(0.44%) 2/321 = 0.62% #> 78 MALE REPRODUCTIVE TRACT NEOPLASM NOS 1(0.22%) 1/321 = 0.31% #> 79 #> 80 TRACHEITIS 3(0.67%) 3/321 = 0.93% #> 81 TRACHEAL COLLAPSE 1(0.22%) 1/321 = 0.31% #> 82 TRACHEAL AND LARYNGEAL DISORDER NOS 5(1.11%) 5/321 = 1.56% #> 83 SNEEZING 1(0.22%) 1/321 = 0.31% #> 84 RESPIRATORY TRACT INFECTION NOS 4(0.89%) 4/321 = 1.25% #> 85 COUGH 3(0.67%) 3/321 = 0.93% #> 86 ANOXIA 1(0.22%) 1/321 = 0.31% #> 87 DYSPNOEA 3(0.67%) 3/321 = 0.93% #> 88 PNEUMONIA 1(0.22%) 1/321 = 0.31% #> 89 PULMONARY OEDEMA 9(2.00%) 9/321 = 2.8% #> 90 BRONCHITIS 3(0.67%) 3/321 = 0.93% #> 91 PULMONARY NEOPLASM 1(0.22%) 1/321 = 0.31% #> 92 #> 93 ERYTHEMA 1(0.22%) 1/321 = 0.31% #> 94 DERMATITIS AND ECZEMA 2(0.44%) 2/321 = 0.62% #> 95 SKIN TEXTURAL CHANGE 1(0.22%) 1/321 = 0.31% #> 96 BACTERIAL SKIN INFECTION 3(0.67%) 3/321 = 0.93% #> 97 #> 98 HYPERTHERMIA 2(0.44%) 2/321 = 0.62% #> 99 WEIGHT LOSS 5(1.11%) 5/321 = 1.56% #> 100 DEATH 14(3.10%) 14/321 = 4.36% #> 101 ANOREXIA 26(5.76%) 25/321 = 7.79% #> 102 SUSPECTED INFECTIOUS AGENT TRANSMISSION 1(0.22%) 1/321 = 0.31% #> 103 APPETITE DISORDER NOS 1(0.22%) 1/321 = 0.31% #> 104 DEHYDRATION 5(1.11%) 5/321 = 1.56% #> 105 POLYDIPSIA 10(2.22%) 10/321 = 3.12% #> 106 LETHARGY 13(2.88%) 12/321 = 3.74% #> 107 #> 108 UNCODED SIGN 2(0.44%) 2/321 = 0.62% #> 109 #> 110 ALL 235(100%) 142/321 = 44.24% #> 111 #> 112 ANXIETY 2(0.85%) 1/321 = 0.31% #> 113 #> 114 ANAEMIA NOS 1(0.43%) 1/321 = 0.31% #> 115 LYMPHADENITIS 1(0.43%) 1/321 = 0.31% #> 116 HAEMOLYTIC ANAEMIA 1(0.43%) 1/321 = 0.31% #> 117 LEUCOCYTOSIS 5(2.13%) 5/321 = 1.56% #> 118 #> 119 HYPOTENSION 2(0.85%) 2/321 = 0.62% #> 120 CARDIAC ARREST 2(0.85%) 2/321 = 0.62% #> 121 HYPERTENSION 3(1.28%) 2/321 = 0.62% #> 122 ARRHYTHMIA 2(0.85%) 2/321 = 0.62% #> 123 #> 124 GASTROENTERITIS 3(1.28%) 3/321 = 0.93% #> 125 GINGIVAL DISORDER 1(0.43%) 1/321 = 0.31% #> 126 NAUSEA 1(0.43%) 1/321 = 0.31% #> 127 DIARRHOEA 8(3.40%) 8/321 = 2.49% #> 128 DIGESTIVE TRACT DISORDER NOS 2(0.85%) 2/321 = 0.62% #> 129 STOMATITIS 2(0.85%) 2/321 = 0.62% #> 130 INTESTINAL STASIS 1(0.43%) 1/321 = 0.31% #> 131 COLITIS 1(0.43%) 1/321 = 0.31% #> 132 DIGESTIVE TRACT NEOPLASM NOS 1(0.43%) 1/321 = 0.31% #> 133 ANAL SAC DISORDER 1(0.43%) 1/321 = 0.31% #> 134 TOOTH DISORDER 1(0.43%) 1/321 = 0.31% #> 135 EMESIS 14(5.96%) 13/321 = 4.05% #> 136 ENTERITIS 1(0.43%) 1/321 = 0.31% #> 137 #> 138 OTITIS NOS 2(0.85%) 2/321 = 0.62% #> 139 #> 140 CONJUNCTIVITIS 3(1.28%) 3/321 = 0.93% #> 141 #> 142 HEPATOPATHY 2(0.85%) 2/321 = 0.62% #> 143 #> 144 MAMMARY GLAND NEOPLASM NOS 1(0.43%) 1/321 = 0.31% #> 145 #> 146 ELECTROLYTE DISORDER 2(0.85%) 1/321 = 0.31% #> 147 HYPERPHOSPHATAEMIA 1(0.43%) 1/321 = 0.31% #> 148 #> 149 LAMENESS 1(0.43%) 1/321 = 0.31% #> 150 ARTHROSIS 2(0.85%) 2/321 = 0.62% #> 151 BONE AND JOINT DISORDER NOS 1(0.43%) 1/321 = 0.31% #> 152 MUSCLE WEAKNESS NOS 1(0.43%) 1/321 = 0.31% #> 153 MUSCULOSKELETAL DISORDER NOS 1(0.43%) 1/321 = 0.31% #> 154 OSTEOSARCOMA 1(0.43%) 1/321 = 0.31% #> 155 #> 156 ATAXIA 3(1.28%) 3/321 = 0.93% #> 157 CONVULSION 1(0.43%) 1/321 = 0.31% #> 158 MUSCLE TREMOR 1(0.43%) 1/321 = 0.31% #> 159 #> 160 POLYURIA 2(0.85%) 2/321 = 0.62% #> 161 URINE ABNORMALITIES 1(0.43%) 1/321 = 0.31% #> 162 RENAL INSUFFICIENCY 75(31.91%) 60/321 = 18.69% #> 163 CYSTITIS 3(1.28%) 3/321 = 0.93% #> 164 #> 165 PROSTATIC DISORDER NOS 1(0.43%) 1/321 = 0.31% #> 166 PSEUDOPREGNANCY 1(0.43%) 1/321 = 0.31% #> 167 #> 168 ANOXIA 1(0.43%) 1/321 = 0.31% #> 169 COUGH 2(0.85%) 2/321 = 0.62% #> 170 PULMONARY OEDEMA 6(2.55%) 6/321 = 1.87% #> 171 BRONCHITIS 2(0.85%) 2/321 = 0.62% #> 172 RESPIRATORY TRACT INFECTION NOS 3(1.28%) 3/321 = 0.93% #> 173 PNEUMONIA 1(0.43%) 1/321 = 0.31% #> 174 TRACHEAL COLLAPSE 1(0.43%) 1/321 = 0.31% #> 175 DYSPNOEA 2(0.85%) 2/321 = 0.62% #> 176 TRACHEAL AND LARYNGEAL DISORDER NOS 3(1.28%) 3/321 = 0.93% #> 177 TRACHEITIS 2(0.85%) 2/321 = 0.62% #> 178 #> 179 DERMATITIS AND ECZEMA 1(0.43%) 1/321 = 0.31% #> 180 ERYTHEMA 1(0.43%) 1/321 = 0.31% #> 181 BACTERIAL SKIN INFECTION 2(0.85%) 2/321 = 0.62% #> 182 SKIN TEXTURAL CHANGE 1(0.43%) 1/321 = 0.31% #> 183 #> 184 ANOREXIA 12(5.11%) 12/321 = 3.74% #> 185 SUSPECTED INFECTIOUS AGENT TRANSMISSION 1(0.43%) 1/321 = 0.31% #> 186 POLYDIPSIA 6(2.55%) 6/321 = 1.87% #> 187 DEATH 8(3.40%) 8/321 = 2.49% #> 188 DEHYDRATION 2(0.85%) 2/321 = 0.62% #> 189 WEIGHT LOSS 4(1.70%) 4/321 = 1.25% #> 190 HYPERTHERMIA 1(0.43%) 1/321 = 0.31% #> 191 LETHARGY 10(4.26%) 10/321 = 3.12% #> 192 #> 193 UNCODED SIGN 1(0.43%) 1/321 = 0.31% #> 194 #> 195 ALL 216(100%) 139/321 = 43.3% #> 196 #> 197 ANXIETY 1(0.46%) 1/321 = 0.31% #> 198 #> 199 RED BLOOD CELL DISORDER NOS 2(0.93%) 1/321 = 0.31% #> 200 #> 201 HEART DISORDER AGGRAVATED 2(0.93%) 2/321 = 0.62% #> 202 HEART BLOCK 2(0.93%) 2/321 = 0.62% #> 203 HYPOTENSION 3(1.39%) 3/321 = 0.93% #> 204 VALVULAR DISORDER 1(0.46%) 1/321 = 0.31% #> 205 ARRHYTHMIA 3(1.39%) 3/321 = 0.93% #> 206 CARDIAC DISORDER NOS 1(0.46%) 1/321 = 0.31% #> 207 #> 208 HAEMORRHAGIC DIARRHOEA 2(0.93%) 2/321 = 0.62% #> 209 DIGESTIVE TRACT DISORDER NOS 3(1.39%) 3/321 = 0.93% #> 210 EMESIS 13(6.02%) 13/321 = 4.05% #> 211 DIARRHOEA 9(4.17%) 8/321 = 2.49% #> 212 HAEMORRHAGIC GASTROENTERITIS 1(0.46%) 1/321 = 0.31% #> 213 GASTROENTERITIS 2(0.93%) 2/321 = 0.62% #> 214 GINGIVAL DISORDER 1(0.46%) 1/321 = 0.31% #> 215 INTESTINAL STASIS 3(1.39%) 3/321 = 0.93% #> 216 TOOTH DISORDER 1(0.46%) 1/321 = 0.31% #> 217 #> 218 OTITIS EXTERNA 1(0.46%) 1/321 = 0.31% #> 219 #> 220 GLAUCOMA 1(0.46%) 1/321 = 0.31% #> 221 CONJUNCTIVITIS 4(1.85%) 4/321 = 1.25% #> 222 CORNEAL ULCER 1(0.46%) 1/321 = 0.31% #> 223 KERATITIS 1(0.46%) 1/321 = 0.31% #> 224 #> 225 HEPATOPATHY 3(1.39%) 3/321 = 0.93% #> 226 #> 227 ELECTROLYTE DISORDER 3(1.39%) 3/321 = 0.93% #> 228 HYPERPHOSPHATAEMIA 1(0.46%) 1/321 = 0.31% #> 229 #> 230 OSTEOSARCOMA 1(0.46%) 1/321 = 0.31% #> 231 ARTHRITIS 1(0.46%) 1/321 = 0.31% #> 232 LAMENESS 3(1.39%) 3/321 = 0.93% #> 233 MUSCULOSKELETAL DISORDER NOS 3(1.39%) 3/321 = 0.93% #> 234 #> 235 CONVULSION 1(0.46%) 1/321 = 0.31% #> 236 CRANIAL NERVE DISORDER 1(0.46%) 1/321 = 0.31% #> 237 MYDRIASIS 1(0.46%) 1/321 = 0.31% #> 238 EPILEPTIC SEIZURE 1(0.46%) 1/321 = 0.31% #> 239 ATAXIA 1(0.46%) 1/321 = 0.31% #> 240 #> 241 URINE ABNORMALITIES 2(0.93%) 2/321 = 0.62% #> 242 RENAL INSUFFICIENCY 69(31.94%) 60/321 = 18.69% #> 243 UROLITHIASIS 1(0.46%) 1/321 = 0.31% #> 244 POLYURIA 2(0.93%) 2/321 = 0.62% #> 245 URINARY TRACT DISORDER NOS 2(0.93%) 2/321 = 0.62% #> 246 CYSTITIS 2(0.93%) 2/321 = 0.62% #> 247 URINARY INCONTINENCE 6(2.78%) 6/321 = 1.87% #> 248 #> 249 MALE REPRODUCTIVE TRACT NEOPLASM NOS 1(0.46%) 1/321 = 0.31% #> 250 PROSTATIC DISORDER NOS 1(0.46%) 1/321 = 0.31% #> 251 METRITIS 2(0.93%) 2/321 = 0.62% #> 252 FEMALE REPRODUCTIVE TRACT NEOPLASM NOS 2(0.93%) 1/321 = 0.31% #> 253 #> 254 BRONCHITIS 1(0.46%) 1/321 = 0.31% #> 255 PULMONARY OEDEMA 3(1.39%) 3/321 = 0.93% #> 256 RESPIRATORY TRACT INFECTION NOS 1(0.46%) 1/321 = 0.31% #> 257 SNEEZING 1(0.46%) 1/321 = 0.31% #> 258 COUGH 1(0.46%) 1/321 = 0.31% #> 259 PULMONARY NEOPLASM 1(0.46%) 1/321 = 0.31% #> 260 DYSPNOEA 1(0.46%) 1/321 = 0.31% #> 261 TRACHEITIS 1(0.46%) 1/321 = 0.31% #> 262 TRACHEAL AND LARYNGEAL DISORDER NOS 2(0.93%) 2/321 = 0.62% #> 263 #> 264 BACTERIAL SKIN INFECTION 1(0.46%) 1/321 = 0.31% #> 265 DERMATITIS AND ECZEMA 1(0.46%) 1/321 = 0.31% #> 266 #> 267 ANOREXIA 14(6.48%) 14/321 = 4.36% #> 268 LETHARGY 3(1.39%) 3/321 = 0.93% #> 269 APPETITE DISORDER NOS 1(0.46%) 1/321 = 0.31% #> 270 DEHYDRATION 3(1.39%) 3/321 = 0.93% #> 271 HYPERTHERMIA 1(0.46%) 1/321 = 0.31% #> 272 POLYDIPSIA 4(1.85%) 4/321 = 1.25% #> 273 WEIGHT LOSS 1(0.46%) 1/321 = 0.31% #> 274 DEATH 6(2.78%) 6/321 = 1.87% #> 275 #> 276 UNCODED SIGN 1(0.46%) 1/321 = 0.31% #> randtrt #> 1 A+B #> 2 A+B #> 3 A+B #> 4 A+B #> 5 A+B #> 6 A+B #> 7 A+B #> 8 A+B #> 9 A+B #> 10 A+B #> 11 A+B #> 12 A+B #> 13 A+B #> 14 A+B #> 15 A+B #> 16 A+B #> 17 A+B #> 18 A+B #> 19 A+B #> 20 A+B #> 21 A+B #> 22 A+B #> 23 A+B #> 24 A+B #> 25 A+B #> 26 A+B #> 27 A+B #> 28 A+B #> 29 A+B #> 30 A+B #> 31 A+B #> 32 A+B #> 33 A+B #> 34 A+B #> 35 A+B #> 36 A+B #> 37 A+B #> 38 A+B #> 39 A+B #> 40 A+B #> 41 A+B #> 42 A+B #> 43 A+B #> 44 A+B #> 45 A+B #> 46 A+B #> 47 A+B #> 48 A+B #> 49 A+B #> 50 A+B #> 51 A+B #> 52 A+B #> 53 A+B #> 54 A+B #> 55 A+B #> 56 A+B #> 57 A+B #> 58 A+B #> 59 A+B #> 60 A+B #> 61 A+B #> 62 A+B #> 63 A+B #> 64 A+B #> 65 A+B #> 66 A+B #> 67 A+B #> 68 A+B #> 69 A+B #> 70 A+B #> 71 A+B #> 72 A+B #> 73 A+B #> 74 A+B #> 75 A+B #> 76 A+B #> 77 A+B #> 78 A+B #> 79 A+B #> 80 A+B #> 81 A+B #> 82 A+B #> 83 A+B #> 84 A+B #> 85 A+B #> 86 A+B #> 87 A+B #> 88 A+B #> 89 A+B #> 90 A+B #> 91 A+B #> 92 A+B #> 93 A+B #> 94 A+B #> 95 A+B #> 96 A+B #> 97 A+B #> 98 A+B #> 99 A+B #> 100 A+B #> 101 A+B #> 102 A+B #> 103 A+B #> 104 A+B #> 105 A+B #> 106 A+B #> 107 A+B #> 108 A+B #> 109 #> 110 A #> 111 A #> 112 A #> 113 A #> 114 A #> 115 A #> 116 A #> 117 A #> 118 A #> 119 A #> 120 A #> 121 A #> 122 A #> 123 A #> 124 A #> 125 A #> 126 A #> 127 A #> 128 A #> 129 A #> 130 A #> 131 A #> 132 A #> 133 A #> 134 A #> 135 A #> 136 A #> 137 A #> 138 A #> 139 A #> 140 A #> 141 A #> 142 A #> 143 A #> 144 A #> 145 A #> 146 A #> 147 A #> 148 A #> 149 A #> 150 A #> 151 A #> 152 A #> 153 A #> 154 A #> 155 A #> 156 A #> 157 A #> 158 A #> 159 A #> 160 A #> 161 A #> 162 A #> 163 A #> 164 A #> 165 A #> 166 A #> 167 A #> 168 A #> 169 A #> 170 A #> 171 A #> 172 A #> 173 A #> 174 A #> 175 A #> 176 A #> 177 A #> 178 A #> 179 A #> 180 A #> 181 A #> 182 A #> 183 A #> 184 A #> 185 A #> 186 A #> 187 A #> 188 A #> 189 A #> 190 A #> 191 A #> 192 A #> 193 A #> 194 #> 195 B #> 196 B #> 197 B #> 198 B #> 199 B #> 200 B #> 201 B #> 202 B #> 203 B #> 204 B #> 205 B #> 206 B #> 207 B #> 208 B #> 209 B #> 210 B #> 211 B #> 212 B #> 213 B #> 214 B #> 215 B #> 216 B #> 217 B #> 218 B #> 219 B #> 220 B #> 221 B #> 222 B #> 223 B #> 224 B #> 225 B #> 226 B #> 227 B #> 228 B #> 229 B #> 230 B #> 231 B #> 232 B #> 233 B #> 234 B #> 235 B #> 236 B #> 237 B #> 238 B #> 239 B #> 240 B #> 241 B #> 242 B #> 243 B #> 244 B #> 245 B #> 246 B #> 247 B #> 248 B #> 249 B #> 250 B #> 251 B #> 252 B #> 253 B #> 254 B #> 255 B #> 256 B #> 257 B #> 258 B #> 259 B #> 260 B #> 261 B #> 262 B #> 263 B #> 264 B #> 265 B #> 266 B #> 267 B #> 268 B #> 269 B #> 270 B #> 271 B #> 272 B #> 273 B #> 274 B #> 275 B #> 276 B #> #> ############################################ #>#> a flextable object. #> col_keys: `System Organ Class`, `n (%) SOCNAME`, `At least one SOCNAME`, `Prefered Terms`, `n (%) PTNAME`, `At least one PTNAME`, `randtrt` #> header has 2 row(s) #> body has 276 row(s) #> original dataset sample: #> System Organ Class n (%) SOCNAME At least one SOCNAME #> 1 ALL 451(100%) 195/321 = 60.75% #> 2 #> 3 BEHAVIOURAL DISORDERS 3(0.67%) 1/321 = 0.31% #> 4 #> 5 BLOOD AND LYMPHATIC SYSTEM DISORDERS 10(2.22%) 7/321 = 2.18% #> Prefered Terms n (%) PTNAME At least one PTNAME randtrt #> 1 ALL 451(100%) 195/321 = 60.75% A+B #> 2 A+B #> 3 ANXIETY 3(0.67%) 1/321 = 0.31% A+B #> 4 A+B #> 5 ANAEMIA NOS 1(0.22%) 1/321 = 0.31% A+B